CB2-101: Bioinformatics computing (Introduction to Scientific Computing)
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The 2019 course is going to start soon. The course is free for everyone. No computing experience necessary. Contact malay@uab.edu for more information.
- Dates: Nov 1 - 15, 2019
Time: 9:00 AM - 1:00 PM every working day
Location: Volker Hall (VHG073)
- Registration
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Registration form Please register first using this form then proceed to Gitter registration below. Gitter room Course info and discussion forum. We also use this platform for all communications inside and outside of the class. If you have not joined already, join by clicking here.
- General resources
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Syllabus Anthem of CB2-101 Computer Love, Album: Computer World, Kraftwerk (1981). Course disk image CentOS 7 (64bit) VirtualBox disk image, compressed with zip. Download the latest version of VirtualBox for your OS here. Install the image in VirtualBox using instructions here. Github repository Course materials source code and binaries.
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Materials
Introduction to Linux November 1, 2019. Introduction to R November 4-5, 2019. Reproducible research in R slides and handout November 5, 2019. Important data formats: talk and handout. November 7, 2019 Problem set 2. Datafile for problem set 2. November 7, 2019. Sequence search slides and handout November 8, 2019. Molecular Evolution slides and handout November 11-12, 2019. Introduction to NGS talk and handout November 12-13, 2019. Alignment and variant calling. Shell commands. November 13, 2019 Variant annotation tabix and vcftools. November 14, 2019 Introduction to RNASeq: talk & handout. November 15, 2019 Final problem set November 15, 2019.
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Previous Editions
Nov 2018 Held November 1-16, 2018. Nov 2017 Held November 2-17, 2017. Nov 2016 Held November 3-18, 2016. Nov 2015 Held November 5-20, 2015. Nov 2014 Held November 6-21, 2014. Feb 2014 Held February 17-28, 2014.
University of Alabama at Birmingham. 619 19th St. South, WP220. Birmingham (AL), 35249 (USA).
